Installation

Requirements

phys2bids requires python 3.6 or above, as well as the modules:

• numpy >= 1.9.3

• matplotlib >= 3.1.1

Depending on the processed files, it might require the manual installation of other modules. At the moment, those modules are:

• bioread, for AcqKnowledge (.acq) files.

Linux and mac installation

Download the package from github and uncompress it. Alternatively, if you have git, use the command:: git clone https://github.com/physiopy/phys2bids.git

Install with pip

Open a terminal in the phy2bids folder and execute the command:: pip3 install .

If python 3 is already your default, you might use instead:: pip install .

If you need to install other libraries, you can call again pip:: pip3 install bioread

Install without pip

Open a terminal in the phy2bids folder and execute the command:: python3 setup.py

If python 3 is already your default, you might use instead:: python setup.py

Check your installation!

Type the command:: phys2bids -v

If your output is: phys2bids 1.2.0-beta or similar, phys2bids is ready to be used.